How to cite
- Keren Zhou†*, Junhong Huang†, Shurong Liu†, Wujian Zheng†, Shun Liu†, Yinghao Xing, Yinan Cao, Yibo Chen, Xinping Hu, Li Cai, Jie Zhou, Penghui Lin, Jiajia Xuan, Fangzhou Xie, Lahong Xu, Junhao Li, Lingling Zheng, Lianghu Qu*, Jianjun Chen*, Bin Li*, and Jianhua Yang*, An Encyclopedic Regulatory and Functional Atlas of RNA Interactomes,Nature Methods (2026).
Contact us
ENCORI is under constant maintenance and improvement. Any questions about the usage, comments or suggestions are appreciated.
The contact: Jianhua Yang (yangjh7@mail.sysu.edu.cn ) or Keren Zhou (zhoukr062@gmail.com ).
Address: MOE Key Laboratory of Gene Function and Regulation, State Key Laboratory for Biocontrol, Guangdong Provincial Key Laboratory of Pharmaceutical Functional Genes, Innovation Center for Evolutionary Synthetic Biology, School of Life Sciences, Sun Yat-sen University, Guangdong, P.R. China
Our tools
We have developed several databases and software for ncRNA research.
ChIPBase v3.0
ChIPBase v3.0: the encyclopedia of transcriptional regulations of non-coding RNAs and protein-coding genes. (Huang et al. 2022 Nov 18:gkac1067)
RMBase v3.0
RMBase v3.0: decode the landscape, mechanisms and functions of RNA modifications. (Xuan et al. Nucleic Acids Res. 2015; doi: 10.1093/nar/gkad1070.)
napBase
NAP-seq reveals multiple classes of structured noncoding RNAs with regulatory functions. (Liu et al. Nat Commun 15, 2425 (2024).)
Pol3Base
Pol3Base: a resource for decoding the interactome, expression, evolution, epitranscriptome and disease variations of Pol III-transcribed ncRNAs. (Cai et al. Nucleic Acids Res. 2022 doi: 10.1093/nar/gkab1033.)
tmodbase
tModBase: deciphering the landscape of tRNA modifications and their dynamic changes from epitranscriptome data. (Lei et al. Nucleic Acids Res. 2023 doi: 10.1093/nar/gkac1087.)