About Us

Contact us

ChIPBase is under constant maintenance and improvement. Any questions about the usages, comments or suggestions are appreciated.
Please contact us:
Jun-Hong Huang (huangjh278@mail2.sysu.edu.cn)
RNA Information Center, State Key Laboratory for Biocontrol, Sun Yat-sen University, Guangzhou 510275, P. R. China

Our tools

We have developed several databases and softwares for ncRNA research.

starBase v2.0

A database for exploring miRNA-mRNA and miRNA-ncRNA interaction maps from Argonaute and other RBP CLIP-Seq data. (Li et al. Nucleic Acids Res. 2014;42:D92-7)

deepBase v3.0

Expression atlas and interactive analysis of ncRNAs from thousands of deep-sequencing data (Fang-Zhou Xie, et al. Nucleic Acids Res. 2021;49(D1):D877-883.)


A web server for scanning small RNA targets from degradome sequencing data. (Liu et al. Nucleic Acids Res. 2015 Jul 1;43(W1):W480-6.)


RMBase: a resource for decoding the landscape of RNA modifications from high-throughput sequencing data. (Sun WJ et al. Nucleic Acids Res. 2016 Jan 4;44(D1):D259-65.)


An advanced computational package for screening of guide and orphan snoRNA genes in the human genome. (Yang et al. Nucleic Acids Res. 2006;34:5112-5123)