How to cite:

[1] Huang J, Zheng W, Zhang P, Lin Q, Chen Z, Xuan J, Liu C, Wu D, Huang Q, Zheng L, Liu S, Zhou K, Qu L, Li B, Yang J. (2022) ChIPBase v3.0: the encyclopedia of transcriptional regulations of non-coding RNAs and protein-coding genes. Nucleic Acids Res, 2022 Nov 18:gkac1067.

[2] Zhou, K.R., Liu, S., Sun, W.J., Zheng, L.L., Zhou, H., Yang, J.H. and Qu, L.H. (2017) ChIPBase v2.0: decoding transcriptional regulatory networks of non-coding RNAs and protein-coding genes from ChIP-seq data. Nucleic Acids Res, 45, D43-D50.

[3] Yang, J.H., Li, J.H., Jiang, S., Zhou, H. and Qu, L.H. (2013) ChIPBase: a database for decoding the transcriptional regulation of long non-coding RNA and microRNA genes from ChIP-Seq data. Nucleic Acids Res, 41, D177-187.

Acknowledgements:

Thanks to CistromeDB, ReMap2022, ENCODE for providing ChIP-seq peak data.

Thanks to ENCODE, TCGA, GTEx, CCLE, ICGC for providing RNA-seq data.

Thanks to ICGC, COSMIC for providing SNV data.

Thanks to COSMIC, GWAS Catalog for providing SNP data.

Thanks to Ensembl, GENCODE, NCBI RefSeq for providing gene annotation data.

Statement:

We clear about which data is used form the abovementioned databases and ensure that we have the right to share, adapt, and redistribute the data we have imported.

Reference:

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