How to cite
- Zhou KR, Huang JH, Liu S, Zheng WJ, Liu SR, et al. An Encyclopedic Regulatory and Functional Atlas of RNA Interactomes. (Manuscript submitted)
- Li JH, et al.starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data , Nucleic Acids Res. 2014 Jan;42:D92-7.
Contact us
ENCORI is under constant maintenance and improvement. Any questions about the usage, comments or suggestions are appreciated.
The contact: Jian-Hua Yang (yangjh7@mail.sysu.edu.cn ) or Ke-Ren Zhou (zhoukr062@gmail.com ).
Address: RNA Information Center, State Key Laboratory for Biocontrol, Sun Yat-sen University, Guangzhou 510275, P. R. China
Our tools
We have developed several databases and software for ncRNA research.
ChIPBase v3.0
ChIPBase v3.0: the encyclopedia of transcriptional regulations of non-coding RNAs and protein-coding genes. (Huang et al. 2022 Nov 18:gkac1067)
RMBase v3.0
RMBase v3.0: decode the landscape, mechanisms and functions of RNA modifications. (Xuan et al. Nucleic Acids Res. 2015; doi: 10.1093/nar/gkad1070.)
napBase
NAP-seq reveals multiple classes of structured noncoding RNAs with regulatory functions. (Liu et al. Nat Commun 15, 2425 (2024).)
Pol3Base
Pol3Base: a resource for decoding the interactome, expression, evolution, epitranscriptome and disease variations of Pol III-transcribed ncRNAs. (Cai et al. Nucleic Acids Res. 2022 doi: 10.1093/nar/gkab1033.)
tmodbase
tModBase: deciphering the landscape of tRNA modifications and their dynamic changes from epitranscriptome data. (Lei et al. Nucleic Acids Res. 2023 doi: 10.1093/nar/gkac1087.)