How to cite
- Zhou K, Huang J, Liu S, Zheng W, Liu S, Xing Y, Cao Y, Chen Y, Hu X, Cai L, Zhou J, Lin P, Xuan J, Xie F, Xu L, Li J, Zheng L, Qu L, Chen J, Li B, Yang J.,
An Encyclopedic Regulatory and Functional Atlas of RNA Interactomes, Nature Methods. 2026 Jun;23(6):1109-1114. Epub 2026 May 25. PMID: 42185542.
Contact us
Visit our lab website: https://rnasysu.com/yanglab/
ENCORI is under constant maintenance and improvement. Any questions about the usage, comments or suggestions are appreciated.
The contact: Jianhua Yang (yangjh7@mail.sysu.edu.cn ) or Keren Zhou (zhoukr062@gmail.com ).
Address: MOE Key Laboratory of Gene Function and Regulation, State Key Laboratory for Biocontrol, Guangdong Provincial Key Laboratory of Pharmaceutical Functional Genes, Innovation Center for Evolutionary Synthetic Biology, School of Life Sciences, Sun Yat-sen University, Guangdong, P.R. China
Our software and databases
We have developed several databases and software for ncRNA research.
kturnSeeker
Identifying forward Kink-turn RNAs (fktRNAs) and backward Kink-turn RNAs (bktRNAs)
napSeeker
Identifying non-capped RNA from NAP-seq data
endSeeker
Identifying 2'-O-Methylation sites from Nm-REP-seq data
snoSeeker
Identifying snoRNAs and targets
circscan
Discovering the Circular RNA Interactions with RNA-binding Proteins and Ribosomes
clipSearch
A tool for identifying miRNA-target interactions from CLIP-seq peaks
starBase/Encori
Decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data
ChipBase
Decoding the transcriptional regulation of long non-coding RNA and microRNA genes from ChIP-Seq data
RMBase
Decodeing the landscape, mechanisms and functions of RNA modifications
deepBase
Expression atlas and interactive analysis of ncRNAs from thousands of deep-sequencing data
pol3Base
The first open database developed for exploring the interactome, expression, evolution, epitranscriptome and disease variations of RNA Pol III-transcribed ncRNAs.
napBase
Browse the structures of napRNAs