Description:

Here, we presented the motif scan results of UGCAUG motif from the binding motifs of RBPs which were de novo identified by using homer software.

Usage:

Select the Genome: hg38
Select the P-value parameter to focus on the motifs with minimum P-value output by HOMER software
Select the CLIP-seq Type parameter to retrieve the motifs found in a particular CLIP-seq methodologies (e.g., PAR-CLIP, iCLIP, HITS-CLIP, eCLIP).
Select the Motif length parameter to focus on the specific motif length. Note: short motif refers to 4-6 nt, while long motif refers to 7-10 nt.
Enter a motif sequence (e.g., UGCAUG) in Scanned Motif parameter to scan the enriched motifs in RBP-binding regions.
Please noted that IUPAC nucleotide codes are also supported (eg. BGCNUG)! Users can filter the results by searching in the table. The searchable columns are allowed using comparison operators like ">=", "<=", ">", "<" and "=". The ">=" is set by default.