Description:

Here, we presented the RBP-RNA interactions supported by the binding sites of RBPs derived from CLIP-seq data. All identified binding sites within 200bp of a RBP will be defined as a RBP-binding cluster.

Please note that 'NA' values in HepG2(shRNA/CRISPR) or K562(shRNA/CRISPR) columns mean that there were no siginificant (FDR <= 0.1) changes of gene expressions detected following RBP silcencing (knockout) or the RNA-seq data of RBP silencing (knockout) were not available.

Usage:

Select the RBP: all
Select the target: MYC
Refine results with high stringency of CLIP Data: 3
Explore the interaction of miRNA-mRNA with Pan-Cancer analysis: 5
Users can filter the results by searching in the table. The searchable columns are allowed using comparison operators like ">=", "<=", ">", "<" and "=". The ">=" is set by default.