Description:

Here, we presented the RBP-RNA interactions supported by the binding sites of RBPs derived from CLIP-seq data. All identified binding sites within 200bp of a RBP will be defined as a RBP-binding cluster.

Usage:

Select the RBP parameter to browse the RBP-caRNA interactions (selected RBP or all RBPs).
Select the target parameter to browse the RBP-caRNA interactions (selected target gene or all target genes).
Refine results with the CLIP Data parameter (the number of supported AGO-CLIP-seq experiments).
Refine results with the CLIP Region Type parameter (the type of supported RBP-binding events identified by rbsSeeker: peak or individual cross-linking site).
Refine results with the CLIP Region P-value parameter (the minimum significance of supported RBP-binding events identified by rbsSeeker).
Refine results with the CLIP-seq Type parameter (the supported CLIP-seq methodologies: e.g., HITS-CLIP, iCLIP, PAR-CLIP or eCLIP).
Users can filter the results by searching in the table. The searchable columns are allowed using comparison operators like ">=", "<=", ">", "<" and "=". The ">=" is set by default.