The Motifs of RNA-binding protein (De novo Discovery)

Rank MotifSeqLogo MotifSeq TargetNum Target(%) BackgroundNum Background(%) log10(pval) pdf PWM Region
Rank MotifSeqLogo MotifSeq TargetNum Target(%) BackgroundNum Background(%) log10(pval) pdf PWM Region
Source:

Gene Expression Omnibus (GEO), GSM2585816

Reference:

Courtney DG, et al., Cell Host Microbe 2017 [ link to PubMed: 28910636 ]

Description:

Here, we presented the binding motifs of RBPs that were de novo identified from their CLIP-seq peak data by using homer software.


Usage:

Select a RBP parameter to browse the binding motifs of a particular RBP.
Select a Cell line/Tissue parameter to retrive the binding motifs for a cell line/tissue.
Select the Sample parameter to focus on the specific experiment condition.
Select the Motif length parameter to focus on the specific motif length. Note: short motif refers to 4-6 nt, while long motif refers to 7-10 nt.
Users can filter the results by searching in the table. The searchable columns are allowed using comparison operators like ">=", "<=", ">", "<" and "=". The ">=" is set by default.